PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57518.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 143aa    MW: 16320.9 Da    PI: 9.5919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57518.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-063252323
                  ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                  C++Cgk F r  nL+ H r H
  MLOC_57518.4 32 CEICGKGFQRDQNLQLHRRGH 52
                  *******************88 PP
2zf-C2H213.40.00022107129123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC +C+k +  +s+ k H + +
  MLOC_57518.4 107 WKCDKCSKKYAVQSDWKAHSKIC 129
                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-62952IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-82952No hitNo description
PROSITE profilePS5015711.4893052IPR007087Zinc finger, C2H2
SMARTSM003550.0763052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035513072102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-595128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-8102127No hitNo description
SMARTSM00355150107127IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEPMDANAIA DPESEVVALS PATLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ  60
RGSKEVVRKK VYICPEASCV HHDPSRALGD LTGIKKHFFR KHGEKKWKCD KCSKKYAVQS  120
DWKAHSKICG TREYKCDCGT VFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-21103143343Zinc finger protein JACKDAW
5b3h_F3e-21103143343Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15669KLKQRGSKEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57518.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3628550.0AK362855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010K06.
GenBankAK3753510.0AK375351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184321.15e-96protein indeterminate-domain 7-like
SwissprotQ9LRW75e-86IDD11_ARATH; Protein indeterminate-domain 11
SwissprotQ9SCQ62e-86IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A287KZV42e-95A0A287KZV4_HORVV; Uncharacterized protein
TrEMBLA0A3B6GR731e-94A0A3B6GR73_WHEAT; Uncharacterized protein
TrEMBLA0A446NGC52e-95A0A446NGC5_TRITD; Uncharacterized protein
TrEMBLF2DG381e-94F2DG38_HORVV; Predicted protein
STRINGBRADI2G41550.14e-95(Brachypodium distachyon)
STRINGMLOC_57518.32e-95(Hordeum vulgare)
STRINGTraes_3AL_35CA14632.19e-97(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.13e-77indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]