PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57613.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 494aa    MW: 52913.6 Da    PI: 8.6308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57613.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-066587123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C++C++ F r  nL+ H r+H
  MLOC_57613.3 65 YVCEICNQGFQRDQNLQMHRRRH 87
                  9*********************9 PP
2zf-C2H211.80.00074144165223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C+ C+k +  +s++k H++t+
  MLOC_57613.3 144 ACSRCSKAYAVHSDYKAHLKTC 165
                   6*******************98 PP
3zf-C2H210.80.0016173191523
                   TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                   dCg++Fsr +++  H+ t+
  MLOC_57613.3 173 DCGRVFSRVESFIEHQDTC 191
                   9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.6E-56487No hitNo description
Gene3DG3DSA:3.30.160.602.0E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976587IPR007087Zinc finger, C2H2
SMARTSM003550.00526587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355110107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001134164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.6E-5138163No hitNo description
SMARTSM00355130143170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MLGSCVPMAG PPTEEETAEP PFGSSLQIST GSPATKRKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPSCLHHDPS  120
HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH SCDCGRVFSR  180
VESFIEHQDT CTAGCPQAGA AVPAPVCGVA AAPLSQQQAP PSAMSLSRSR TASSNSPSSD  240
VVISAVTWPG AAAMRSPNAA AFHRFEQQVP SPRTPPPDGR GAGGGGHNLE LQLMPPSSGS  300
TGCVAAPLGV APSWYAAAPQ TPPAPISHGD AAAMQLQLSI GFCSGDNRGR GDVAEPSGGA  360
AARAMQEARD ELRRAMAEKA AADEARAQAK RQGELAEQEL ATAKRMRHQA QVELSRAHAL  420
REHAVRQVNA TLLQITCFSC RQKFRATRPS AAMSSEVACS YVTEGGDVEV DNVDESLILD  480
GMRRRQQHAA MDTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-17139193357Zinc finger protein JACKDAW
5b3h_F9e-17139193357Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57613.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171982.10.0protein indeterminate-domain 16-like
TrEMBLF2E0G00.0F2E0G0_HORVV; Broad leaf 1
STRINGMLOC_57613.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-106indeterminate(ID)-domain 14