PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57764.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 206aa    MW: 22908.4 Da    PI: 8.2072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57764.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.39.7e-213394259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                  +Dg++WrKYG K++++ +fpr YYrCt++   +Cp++k+++++ ++dp + ++tY +eH ++
  MLOC_57764.2 33 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKdHSDPPLYQVTYYNEHSCN 94
                  8***************************99999*******875267*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-232094IPR003657WRKY domain
SuperFamilySSF1182906.8E-222694IPR003657WRKY domain
PROSITE profilePS5081115.8472796IPR003657WRKY domain
SMARTSM007741.9E-303295IPR003657WRKY domain
PfamPF031063.6E-243393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSPVPSPNQS HLLGHGSRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY  60
KDNMNCPATK QIQQKDHSDP PLYQVTYYNE HSCNSAFLAL TPTEFQLQTA SGKAVSICFD  120
SSGAQEPGAN ASSPSSSAAP RSAPSENKNK PLALRSEALS SWGPGVVEQK TACADIQSCS  180
TECQDAYISE DIDAGRFGSI RFFHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-143393968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57764.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3633400.0AK363340.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2014J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174485.11e-144probable WRKY transcription factor 24
TrEMBLF2DHH31e-154F2DHH3_HORVV; Predicted protein (Fragment)
STRINGMLOC_57764.21e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-18WRKY DNA-binding protein 46