PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58019.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 449aa    MW: 48977.5 Da    PI: 4.9256
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58019.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32276332259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+++Hnh+
  MLOC_58019.3 276 EDGYNWRKYGQKQVKSSEHPRSYYKCTHPDCPVKKKVERSQ-DGQITEIVYKSSHNHP 332
                   7****************************************.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-29264334IPR003657WRKY domain
PROSITE profilePS5081123.227270334IPR003657WRKY domain
SuperFamilySSF1182904.32E-26271334IPR003657WRKY domain
SMARTSM007741.8E-34275333IPR003657WRKY domain
PfamPF031062.8E-25276332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAGTSDRGSL MEDWMAMPPT PSPRTLMSSF LNEDFSSGQF SNFFGEHVSN KPHDQSEKRG  60
ELVDLREQVP AQPPTAMPQK DFSLQPNSFN ANQKSNPQGS LAERRASRAG FSIPKIDTSR  120
VGSSTVIRSP IAIPPGLSPT TLLESPVFLY NSMAQPSPTT GKLFVASAAN STMPPDSTFS  180
NDVFSFQPHS GPTSYSNVEK GYNVCHQNQS MSNMHQQGSS LQSSFTAVKD SADEAIVKPK  240
TSDSMFSDNH TSEEQEENEE DQNEEYSSAT NSNPGEDGYN WRKYGQKQVK SSEHPRSYYK  300
CTHPDCPVKK KVERSQDGQI TEIVYKSSHN HPLPPPNRRS GIPSSQINDP QVHVLERPGL  360
HAGLNTASLW ENGKSECIQD AQGVEGRSAA CPPVSAYGDT SIMESQDAAD VSSTLSNEID  420
RATQGTISLD CDGGEDETES KRRLVSPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-172773351675WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58019.3
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3621580.0AK362158.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002O24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200291.10.0probable WRKY transcription factor 2
TrEMBLM0X9160.0M0X916_HORVV; Uncharacterized protein
STRINGMLOC_58019.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.15e-57WRKY DNA-binding protein 2