PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58027.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 99aa    MW: 11203.9 Da    PI: 10.8697
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58027.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.8e-121461055
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
                  + +NRe+ArrsR+RK a++  Le  v++L++e  +L k+l e +++
  MLOC_58027.7  1 MVSNRESARRSRRRKHAQLTDLELQVEQLKNESATLFKQLTEANQQ 46
                  579**********************************777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579592.25E-9147No hitNo description
PROSITE profilePS502179.197146IPR004827Basic-leucine zipper domain
PfamPF001705.7E-9146IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-10247No hitNo description
SMARTSM003382.4E-4356IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MVSNRESARR SRRRKHAQLT DLELQVEQLK NESATLFKQL TEANQQFTTA VTDNRILKSD  60
VETLRIKVKM AEDMVARGAV SCGLGQQLGL APFLNSRKM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58027.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3613381e-153AK361338.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1138D02.
GenBankAK3632571e-153AK363257.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013M10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167700.13e-64basic leucine zipper 9-like isoform X1
RefseqXP_020167701.13e-64basic leucine zipper 9-like isoform X2
SwissprotQ6ETX03e-49RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLM7ZTE26e-64M7ZTE2_TRIUA; Regulatory protein opaque-2
STRINGTRIUR3_09193-P11e-64(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.19e-26basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]