PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58142.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 198aa    MW: 21468.9 Da    PI: 4.9504
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58142.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.71e-3465146390
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgka 90 
                    ++drhski T++g RdRR+Rls+ +a+ fF+Lqd LGfdk+skt++WLl+q+kpai+ l++  + sa  + a+ s ++++       
  MLOC_58142.1  65 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDLLGFDKASKTVDWLLTQSKPAIDRLANAAQGSAVPAAAGPSTKEGA------T 146
                   689************************************************************555552221111111111......1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.2E-3466151IPR005333Transcription factor, TCP
PROSITE profilePS5136934.18766124IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHPAPSASSS FGECFQFFPA EMYHHHQQQD GTLEAVLWQP VTAPAPAERG EPGGALAGAA  60
RKRPFRTDRH SKIRTAQGVR DRRMRLSVGV ARDFFALQDL LGFDKASKTV DWLLTQSKPA  120
IDRLANAAQG SAVPAAAGPS TKEGATSSST GCFEDAREEE HDVRDLMKSI GGEGELDWFM  180
SEAAAIDIEQ PMEGLELD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58142.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5785823e-76KM578582.1 Ischaemum santapaui isolate TK021-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5785833e-76KM578583.1 Ischaemum santapaui isolate TK021-8 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5785853e-76KM578585.1 Ischaemum santapaui isolate TK021-2 retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186977.11e-100transcription factor TCP12-like
TrEMBLA0A3B6APJ81e-103A0A3B6APJ8_WHEAT; Uncharacterized protein
STRINGMLOC_58142.11e-144(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.14e-27TCP family protein