PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58142.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 115aa    MW: 12291.7 Da    PI: 4.0217
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58142.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP73.65.8e-231662293
           TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaks 93
                  +Rls+ +a+ fF+Lqd LGfdk+skt++WLl+q+kpai+ l++  + sa  + a+ s +++      + ++s
  MLOC_58142.2  1 MRLSVGVARDFFALQDLLGFDKASKTVDWLLTQSKPAIDRLANAAQGSAVPAAAGPSTKEG------ATSSS 66
                  8*******************************************55555222111111111......11111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136925.035141IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-20169IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MRLSVGVARD FFALQDLLGF DKASKTVDWL LTQSKPAIDR LANAAQGSAV PAAAGPSTKE  60
GATSSSTGCF EDAREEEHDV RDLMKSIGGE GELDWFMSEA AAIDIEQPME GLELD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58142.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5786202e-42KM578620.1 Paspalum malacophyllum isolate TK058-6 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786212e-42KM578621.1 Paspalum malacophyllum isolate TK058-1 retarded palea 1 protein (rep1) gene, partial cds.
GenBankKM5786222e-42KM578622.1 Paspalum malacophyllum isolate TK058-7 retarded palea 1 protein (rep1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186977.19e-52transcription factor TCP12-like
TrEMBLA0A3B6APJ82e-52A0A3B6APJ8_WHEAT; Uncharacterized protein
STRINGMLOC_58142.18e-77(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.16e-15TCP family protein