PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58202.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YB
Protein Properties Length: 465aa    MW: 52669.6 Da    PI: 4.4896
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58202.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB353.5e-112491380
         NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80
                  e+ +flP+a++ ri +k+ P n+ i ++a   vqe vse          d+++r kr +++gddll  +a+ Gf+ y 
  MLOC_58202.1 24 ERGAFLPVADIRRITRKATPPNGEIDEEA---VQELVSE-------ARGDRSKRAKREAMAGDDLLTEMAKQGFQAYP 91
                  6789*********************9865...7887776.......35699999*********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-62493IPR009072Histone-fold
SuperFamilySSF813839.16E-10107171IPR001810F-box domain
Gene3DG3DSA:3.80.10.109.4E-19114381IPR032675Leucine-rich repeat domain, L domain-like
PfamPF006461.8E-4116160IPR001810F-box domain
SuperFamilySSF520472.55E-7204279No hitNo description
SuperFamilySSF520472.55E-7312380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSSPSGDGGR RISGSPTAGG SREERGAFLP VADIRRITRK ATPPNGEIDE EAVQELVSEA  60
RGDRSKRAKR EAMAGDDLLT EMAKQGFQAY PHKNRVELPC TMKVEPKPLP VSDVRDWSEL  120
PLDALSAIFM KLGTIEILMG AGLVCHSWLV AAKSPELWRF VDMTRHKLVF SKPENVMCQM  180
AKVAIDRSDG RMESFLVQKF VASELLNYIA SRCNSLKSIR LIGACYFWDD EDVVIKLAAK  240
CPMLEEIEYS GQKLTWDFFK GIGAARPGLK RLRVCLPWYD SDSIEHEIRM EQQQSDEEEE  300
EEEEEPYEVW EARHNEEAFA IAESLHELRL LQMAGYGLTK KGVYAILEGC PLEFLDLREC  360
GHLQVNAELQ ARCAKIKHVR LPGGWPHVHC PELDIIEEDE GEVTELPDLY ELEAQALRNG  420
AAMDNVAMDN DDYGENYWED YSLPSSPDSP VPTYSMDDPR YYWEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58202.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3718790.0AK371879.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2142L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155429.10.0putative F-box/LRR-repeat protein 23
TrEMBLF2E6V50.0F2E6V5_HORVV; Predicted protein
STRINGMLOC_58202.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP548710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.61e-16nuclear factor Y, subunit B1