PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58330.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 909aa    MW: 100170 Da    PI: 6.4763
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58330.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24135236199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        ++++++  +l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  MLOC_58330.1 135 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftMQPPAQ--ELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNN 227
                   99*****************************96555544..8************************************************..77777 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  MLOC_58330.1 228 QLLLGIRRA 236
                   789999986 PP
2Auxin_resp116.62.1e-38261344183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  MLOC_58330.1 261 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 344
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.15E-47120264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-42127250IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-22134235No hitNo description
PfamPF023622.2E-22135236IPR003340B3 DNA binding domain
SMARTSM010194.1E-24135237IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957135237IPR003340B3 DNA binding domain
PfamPF065071.6E-33261344IPR010525Auxin response factor
SuperFamilySSF542771.96E-7765846No hitNo description
PfamPF023094.1E-8767856IPR033389AUX/IAA domain
PROSITE profilePS5174522.381770854IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MRLSSPAGAV LPAQSPASPE AAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ  60
VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPQELKDPYL  120
PAELGTANKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDFTMQP PAQELFAKDL  180
HGNEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNDNNQLL LGIRRAARPQ  240
TVMPSSVLSS DSMHIGLLAA AAHAASTNSR FTIFYNPRAS PCEFVIPLAK YVKAVYHTRI  300
SVGMRFRMLF ETEESSVRRY MGTITGISDL DAVRWPNSHW RSVKVGWDES TAGERQPRVS  360
LWEIEPLTTF PMYPTPFPLR LKRPWPTGLP SLHGGKDDDL TSSLMWLRDS ANPGFQSLNF  420
GGAGMNPWMQ PRLDASLLGL QPDIYQTMAA AAFQDPTKVS PTMLQFQQPQ NMVGRATPLL  480
QSQILQQMQP QFQQQSYLQN INGATIQGQA QSEFLQQQLQ RCQSFNEQKP QLLQQQESNQ  540
QQSQGMQVPQ HQHMQQQKNM ANYQSAYSQL SPGPQSSPTA LQTVLPFSQP QSFSDTKMSS  600
LSPSGAPTMH NTLGPFSSET ASHLSMSRPT AVPVAGSWSS KRVAVESLLP SRPQATPHME  660
QLSTTPPSIP QSSALAPLPG RGCLVDQDGN SDPQNHLLFG VNIDSHSLLM QGGLHDENDS  720
TAIPYSTSNF LSPSQHDFSL DQTLNSSGCL DESGYVPCSH TPDQVNQPPA TFVKVYKSGT  780
YGRSLDITKF SNYHELRREL GRLFGLEGQL EDPMRSGWQL VFVDREEDVL LVGDDPWQEF  840
VNSVSCIKIL SPQEVQQMGK QGLELLSSAP GKRLGGGGGS SSCDDYASRQ ESRSLSTGIA  900
SVGSVEVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582836551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157111.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM0XAA90.0M0XAA9_HORVV; Auxin response factor
STRINGMLOC_58330.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]