PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58330.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 938aa    MW: 103351 Da    PI: 6.5988
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58330.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99e-24164265199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        ++++++  +l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  MLOC_58330.2 164 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftMQPPAQ--ELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNN 256
                   99*****************************96555544..8************************************************..77777 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  MLOC_58330.2 257 QLLLGIRRA 265
                   789999986 PP
2Auxin_resp116.62.1e-38290373183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  MLOC_58330.2 290 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 373
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.22E-47149293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-42156279IPR015300DNA-binding pseudobarrel domain
CDDcd100176.05E-22163264No hitNo description
PROSITE profilePS5086312.957164266IPR003340B3 DNA binding domain
SMARTSM010194.1E-24164266IPR003340B3 DNA binding domain
PfamPF023622.3E-22164265IPR003340B3 DNA binding domain
PfamPF065071.6E-33290373IPR010525Auxin response factor
SuperFamilySSF542771.96E-7794875No hitNo description
PfamPF023094.3E-8796885IPR033389AUX/IAA domain
PROSITE profilePS5174522.381799883IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MRLSSPAGAV LPAQSPASPE AAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ  60
VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPVIHIYHVP  120
CASFLFNPVS KGVTSACFSF QQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS  180
VPRRAAEKVF PPLDFTMQPP AQELFAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  240
RLVAGDSVLF IWNDNNQLLL GIRRAARPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF  300
TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD  360
AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPTPFPLRL KRPWPTGLPS  420
LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG GAGMNPWMQP RLDASLLGLQ PDIYQTMAAA  480
AFQDPTKVSP TMLQFQQPQN MVGRATPLLQ SQILQQMQPQ FQQQSYLQNI NGATIQGQAQ  540
SEFLQQQLQR CQSFNEQKPQ LLQQQESNQQ QSQGMQVPQH QHMQQQKNMA NYQSAYSQLS  600
PGPQSSPTAL QTVLPFSQPQ SFSDTKMSSL SPSGAPTMHN TLGPFSSETA SHLSMSRPTA  660
VPVAGSWSSK RVAVESLLPS RPQATPHMEQ LSTTPPSIPQ SSALAPLPGR GCLVDQDGNS  720
DPQNHLLFGV NIDSHSLLMQ GGLHDENDST AIPYSTSNFL SPSQHDFSLD QTLNSSGCLD  780
ESGYVPCSHT PDQVNQPPAT FVKVYKSGTY GRSLDITKFS NYHELRRELG RLFGLEGQLE  840
DPMRSGWQLV FVDREEDVLL VGDDPWQEFV NSVSCIKILS PQEVQQMGKQ GLELLSSAPG  900
KRLGGGGGSS SCDDYASRQE SRSLSTGIAS VGSVEVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1552839451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58330.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157111.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM0XAA80.0M0XAA8_HORVV; Auxin response factor
STRINGMLOC_58330.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]