PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58330.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 304aa    MW: 34369.3 Da    PI: 9.8505
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58330.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-2444145199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        ++++++  +l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  MLOC_58330.5  44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftMQPPAQ--ELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNN 136
                   99*****************************96555544..8************************************************..77777 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  MLOC_58330.5 137 QLLLGIRRA 145
                   789999986 PP
2Auxin_resp1193.8e-39170253183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  MLOC_58330.5 170 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVK 253
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4829173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-4336159IPR015300DNA-binding pseudobarrel domain
CDDcd100176.51E-2343144No hitNo description
PfamPF023623.6E-2344145IPR003340B3 DNA binding domain
SMARTSM010194.1E-2444146IPR003340B3 DNA binding domain
PROSITE profilePS5086312.95744146IPR003340B3 DNA binding domain
PfamPF065072.9E-34170253IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MHADAETDEV YAQMTLQPLN PQELKDPYLP AELGTANKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFTMQPP AQELFAKDLH GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNDNNQLLL GIRRAARPQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF  180
TIFYNPRASP CEFVIPLAKY VKAVYHTRIS VGMRFRMLFE TEESSVRRYM GTITGISDLD  240
AVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPTPFPLRL KRPWPTGLPS  300
LHGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1251274115388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58330.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157111.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A453SWG90.0A0A453SWG9_AEGTS; Auxin response factor
STRINGTraes_7BL_66296695F.10.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]