PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58335.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 165aa    MW: 16597.1 Da    PI: 8.6161
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58335.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like51.81.9e-1624532655
       G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MLOC_58335.2 24 GATPKSVLELMNVKDLTLAHVKSHLQMYRT 53
                  69***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-61953IPR009057Homeodomain-like
TIGRFAMsTIGR015578.8E-122453IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-142453IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MSAQFRRACR AVDPSTLCIL SPAGATPKSV LELMNVKDLT LAHVKSHLQM YRTVKGTDRS  60
SHVATGEQQM VVVDAGGRGC GGGGGGVVAT LRACDVDMAG FCGAPVAAAA SSAPAATTSS  120
AAHFFCASAT GAAAAAAAPL VVLVPSPPPP PIPPRYAWMS TNITY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583GGRGCGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58335.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741180.0AK374118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054O18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193685.18e-35uncharacterized protein LOC109779471
TrEMBLA0A287SFX01e-104A0A287SFX0_HORVV; Uncharacterized protein
STRINGMLOC_58335.34e-85(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.21e-16G2-like family protein