PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58335.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 270aa    MW: 26841.5 Da    PI: 10.8658
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58335.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-31115168255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   pr+rWt+ LH+rF++av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  MLOC_58335.3 115 PRMRWTTALHARFMHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 168
                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-16112168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28113168IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-24115168IPR006447Myb domain, plants
PfamPF002498.2E-8116167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLQRNLPNLS LRISPPAGSS TASSGGPPAA AAKPLRSTEP AAGTDAEGSG EVGFFANPSS  60
GGDPPGLSLG LGTSTVRADA GRPSHPQAPQ GCAFKRAAAG RASPPGGSKR SVRAPRMRWT  120
TALHARFMHA VQLLGGHERA TPKSVLELMN VKDLTLAHVK SHLQMYRTVK GTDRSSHVAT  180
GEQQMVVVDA GGRGCGGGGG GVVATLRACD VDMAGFCGAP VAAAASSAPA ATTSSAAHFF  240
CASATGAAAA AAAPLVVLVP SPPPPPIPPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-17116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-17116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-17116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-17116170357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190198GGRGCGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58335.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3741180.0AK374118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3054O18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193685.11e-125uncharacterized protein LOC109779471
SwissprotQ9FJV56e-40KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A287SFW50.0A0A287SFW5_HORVV; Uncharacterized protein
TrEMBLA0A287SG270.0A0A287SG27_HORVV; Uncharacterized protein
STRINGMLOC_58335.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.27e-37G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]