PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58349.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 354aa    MW: 38269.9 Da    PI: 6.3685
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58349.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31173231259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+ eHnh+
  MLOC_58349.1 173 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRSDPNMLVITYTAEHNHP 231
                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.315167233IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-30170233IPR003657WRKY domain
SuperFamilySSF1182902.62E-26171233IPR003657WRKY domain
SMARTSM007748.6E-38172232IPR003657WRKY domain
PfamPF031062.0E-25174231IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDMEEQANAA ATAAREGDLA DVVARANAMV YSTGARRQPP PPPPSAPARV MIPYEERPAN  60
VACGGGDGEV TLEASPSTVV VDPYLLVAAG GYGLLPQQQQ QQHQHQPLLA FQISEHACCA  120
AADSDDPMRI SPPPPAPHHQ MIMRRNDVRK VVCIPAPPVM SNRAGGGGEV IPSDLWAWRK  180
YGQKPIKGSP YPRGYYRCSS SKGCLARKQV ERSRSDPNML VITYTAEHNH PWPMQRNVLA  240
GYARAHTHAA AKKQHKISSS STTDNAASSS SSNNFHVEQN NLIAGDQLPV NCMMPNSTAY  300
AGDDGGGLVF EGIQPDEVFA ELEELEETDN CPMVIGANVY GSRGVSSNYE WHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23148233579Disease resistance protein RRS1
5w3x_D2e-23148233579Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58349.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177194.11e-180probable WRKY transcription factor 14
SwissprotO647472e-53WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLM0XAD70.0M0XAD7_HORVV; Uncharacterized protein
STRINGMLOC_58349.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-52WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]