PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58349.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 195aa    MW: 21400.7 Da    PI: 7.1771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58349.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-311472259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                  +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+ eHnh+
  MLOC_58349.2 14 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRSDPNMLVITYTAEHNHP 72
                  699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.315874IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-311174IPR003657WRKY domain
SuperFamilySSF1182908.63E-271274IPR003657WRKY domain
SMARTSM007748.6E-381373IPR003657WRKY domain
PfamPF031067.0E-261572IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSNRAGGGGE VIPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCLARKQ VERSRSDPNM  60
LVITYTAEHN HPWPMQRNVL AGYARAHTHA AAKKQHKISS SSTTDNAASS SSSNNFHVEQ  120
NNLIAGDQLP VNCMMPNSTA YAGDDGGGLV FEGIQPDEVF AELEELEETD NCPMVIGANV  180
YGSRGVSSNY EWHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-2315741879Disease resistance protein RRS1
5w3x_D4e-2315741879Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58349.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347192e-64CT834719.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN020J18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177194.11e-112probable WRKY transcription factor 14
SwissprotO647472e-48WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A287T1K41e-144A0A287T1K4_HORVV; Uncharacterized protein
TrEMBLM0XAD81e-145M0XAD8_HORVV; Uncharacterized protein
STRINGMLOC_58349.11e-145(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-46WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]