PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5837.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 347aa    MW: 38917.7 Da    PI: 6.8372
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5837.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-30161215155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rW+ eLHerFvea+++LGG+ekAtPk +l+lmkv+gLt+ hvkSHLQ YR 
  MLOC_5837.2 161 KTRMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYRH 215
                  68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.124158218IPR017930Myb domain
SuperFamilySSF466895.55E-15159215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-27160215IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23161215IPR006447Myb domain, plants
PfamPF002491.8E-8163214IPR001005SANT/Myb domain
PfamPF143794.1E-21249294IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MYSSSSTNSK LYRQISGPPF LPHPPKCDQQ QFSAVQSSVS ALLFASDPSN GGQGHDEHSH  60
DLKDFLNLCG NPSDSSFHRG GSAMAFSEQL EFQFLSEQLG ITLTDNEECP RLDDIYGIPP  120
QCSPILVSPC SDPEGLHSGG SPAEVRLSSS PSSSGETACN KTRMRWSLEL HERFVEALKK  180
LGGPEKATPK GVLNLMKVEG LTIFHVKSHL QNYRHVKYIP EKKEVKRPCS EDNKAKSASG  240
IDSGKKKSFQ MAETLRVQME VQKQLHEQLE VQRKLQLRIE EHARYLQQIL EQQKDRKSPV  300
PKPKEETEVN TTSAPSLKRK ISDTEIEHNS QMDSRWPELQ LNLESEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-22161218158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-22161218158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-22161218158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-22161218158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22161218259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5837.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3622430.0AK362243.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2003J20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187502.11e-177protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_020187503.11e-177protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_020187504.11e-177protein PHOSPHATE STARVATION RESPONSE 3-like
SwissprotQ6YXZ41e-123PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A3B6NMT10.0A0A3B6NMT1_WHEAT; Uncharacterized protein
TrEMBLA0A446V6L20.0A0A446V6L2_TRITD; Uncharacterized protein
STRINGMLOC_5837.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.23e-74G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]