PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_5837.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 233aa MW: 25528.7 Da PI: 7.2904

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_5837.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.8	8e-31	161	215	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+ eLHerFvea+++LGG+ekAtPk +l+lmkv+gLt+ hvkSHLQ YR MLOC_5837.3 161 KTRMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYRH 215 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.124	158	218	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-15	159	215	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-27	160	215	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	161	215	IPR006447	Myb domain, plants
Pfam	PF00249	9.7E-9	163	214	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MYSSSSTNSK LYRQISGPPF LPHPPKCDQQ QFSAVQSSVS ALLFASDPSN GGQGHDEHSH 60 DLKDFLNLCG NPSDSSFHRG GSAMAFSEQL EFQFLSEQLG ITLTDNEECP RLDDIYGIPP 120 QCSPILVSPC SDPEGLHSGG SPAEVRLSSS PSSSGETACN KTRMRWSLEL HERFVEALKK 180 LGGPEKATPK GVLNLMKVEG LTIFHVKSHL QNYRHVKYIP EKKEGKTTKV KGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-24	161	218	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-24	161	218	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-24	161	218	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-24	161	218	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-24	161	218	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_5837.3

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362243	0.0	AK362243.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2003J20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187502.1	1e-108	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020187503.1	1e-108	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020187504.1	1e-108	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	4e-87	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	F2DEC6	1e-164	F2DEC6_HORVV; Predicted protein (Fragment)
STRING	MLOC_5837.1	1e-165	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-43	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]