PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58450.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 120aa    MW: 13264.2 Da    PI: 7.8536
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58450.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH474.2e-154570126
                  --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                  yktelC+ + +tG C yGd+C+FaHg
  MLOC_58450.1 45 YKTELCNKWEETGACLYGDQCQFAHG 70
                  9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-184176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-114276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3094472IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-94471IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-114570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-978110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-1278109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.24982110IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-482109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MFVGVDVGGA KAEEHKGGTD GGEKRAHVVK SAAGLEFEVY SQGMYKTELC NKWEETGACL  60
YGDQCQFAHG IAELRPIIRH PRYKTQVCRM VIGGGLCPYG HRCHFRHSIT PADNIPLLYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-2445108467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985713e-96AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAC0988323e-96AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence.
GenBankAK1063543e-96AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
GenBankAP0149613e-96AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-96CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179183.11e-73zinc finger CCCH domain-containing protein 39-like
SwissprotQ6L5G13e-54C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A287GPN21e-85A0A287GPN2_HORVV; Uncharacterized protein
TrEMBLA0A287GPQ12e-85A0A287GPQ1_HORVV; Uncharacterized protein
STRINGMLOC_58450.23e-85(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-47C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]