PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58467.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 759aa    MW: 80160.6 Da    PI: 6.9118
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58467.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-095545911954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  MLOC_58467.2 554 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 591
                   554459******************************88 PP
2BELL118.72.7e-38415485272
          BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   r e q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  MLOC_58467.2 415 RFEQQRKKAKLISMLDEVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 485
                   6799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF504944.31E-7106193IPR009003Peptidase S1, PA clan
SMARTSM005742.4E-67341483IPR006563POX domain
PfamPF075261.7E-52346482IPR006563POX domain
PROSITE profilePS5007112.6532595IPR001356Homeobox domain
SMARTSM003891.5E-9535599IPR001356Homeobox domain
CDDcd000863.29E-13535596No hitNo description
SuperFamilySSF466892.87E-17537602IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28538601IPR009057Homeodomain-like
PfamPF059203.8E-18552591IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGIAAPPCQA TRQHVSTPKS SAAIHDDGRP ATASSMSHSQ GFHQGSSGVY GFSSDGFDRP  60
GSSQDQQHQE HDHVAQQSRR DKLRVQGFDP AAAGLLPIDG DQHVEPGAMY DHAAATGASN  120
MLAEMFNFSA QTPSGPSATE LLASQMNANY RFGFRQQAPG AVAGLPGDGG WFGSAGPGRA  180
GVVLGGANLL GETSSPKQQG GMAGLATDPA AAMQLFLMNP QQQQQSRSSP TSPPPSDAQS  240
AIQHHEAFQA YGNAASSFGG GGAGVVEGQG LSLSLSPSLQ QLEMAKQAEE LRVRDGVLYF  300
NRQQQQQQQQ QQAASVQQLP MALHGQVGSM GQQLHVGYGP AGVAGVLRNS KYTRAAQELL  360
DEFCSVGRGQ TIKGGGRGGS SSNPNASKGG PSSSGAAQSP SSASKEPPQL SPADRFEQQR  420
KKAKLISMLD EVDRRYNHYC DQMQMVVNFF DSVMGFGAAT PYTALAQKAM SRHFRCLKDA  480
IAAQLRHTCE LLGEKDAGTS SGLTKGETPR LRAIDQSLRQ QRAFHHMGMM EQEAWRPQRG  540
LPERSVSILR SWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMIEEM  600
YQQETKELEG SSAAAGGGGG GGPESGNDPS GADDLHSPTT TGSQQQLVIH HGGGRYGQQE  660
HGMSGVHPHK LDPGAGPSVA DAAFVGLDPA ELLGGDAHVG AADDLYGRFE PGVRMRYGPA  720
TTGAVSGDVS LTLGLQHAGA GNQGPDGSGR FSLRDYNGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16541598158Homeobox protein Meis1
4xrs_B2e-16541598158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58467.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568170.0AK356817.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040E05.
GenBankAK3638800.0AK363880.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019K09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157077.10.0BEL1-like homeodomain protein 4 isoform X2
SwissprotQ9SW801e-137BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLM0XAX40.0M0XAX4_HORVV; Uncharacterized protein
STRINGMLOC_58467.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-129BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]