PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58467.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TALE
Protein Properties Length: 809aa    MW: 85473.4 Da    PI: 6.7711
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58467.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-096046411954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  MLOC_58467.3 604 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 641
                   554459******************************88 PP
2BELL118.63e-38465535272
          BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   r e q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+
  MLOC_58467.3 465 RFEQQRKKAKLISMLDEVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 535
                   6799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF504944.71E-7156243IPR009003Peptidase S1, PA clan
SMARTSM005742.4E-67391533IPR006563POX domain
PfamPF075261.8E-52396532IPR006563POX domain
PROSITE profilePS5007112.6582645IPR001356Homeobox domain
SMARTSM003891.5E-9585649IPR001356Homeobox domain
CDDcd000863.63E-13585646No hitNo description
SuperFamilySSF466893.12E-17587652IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-28588651IPR009057Homeodomain-like
PfamPF059204.1E-18602641IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MGSSSSFFSL SDGCCRRTCQ VCCCARPAGE GDFFSLRRRP DDDDDSGAAS MGIAAPPCQA  60
TRQHVSTPKS SAAIHDDGRP ATASSMSHSQ GFHQGSSGVY GFSSDGFDRP GSSQDQQHQE  120
HDHVAQQSRR DKLRVQGFDP AAAGLLPIDG DQHVEPGAMY DHAAATGASN MLAEMFNFSA  180
QTPSGPSATE LLASQMNANY RFGFRQQAPG AVAGLPGDGG WFGSAGPGRA GVVLGGANLL  240
GETSSPKQQG GMAGLATDPA AAMQLFLMNP QQQQQSRSSP TSPPPSDAQS AIQHHEAFQA  300
YGNAASSFGG GGAGVVEGQG LSLSLSPSLQ QLEMAKQAEE LRVRDGVLYF NRQQQQQQQQ  360
QQAASVQQLP MALHGQVGSM GQQLHVGYGP AGVAGVLRNS KYTRAAQELL DEFCSVGRGQ  420
TIKGGGRGGS SSNPNASKGG PSSSGAAQSP SSASKEPPQL SPADRFEQQR KKAKLISMLD  480
EVDRRYNHYC DQMQMVVNFF DSVMGFGAAT PYTALAQKAM SRHFRCLKDA IAAQLRHTCE  540
LLGEKDAGTS SGLTKGETPR LRAIDQSLRQ QRAFHHMGMM EQEAWRPQRG LPERSVSILR  600
SWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMIEEM YQQETKELEG  660
SSAAAGGGGG GGPESGNDPS GADDLHSPTT TGSQQQLVIH HGGGRYGQQE HGMSGVHPHK  720
LDPGAGPSVA DAAFVGLDPA ELLGGDAHVG AADDLYGRFE PGVRMRYGPA TTGAVSGDVS  780
LTLGLQHAGA GNQGPDGSGR FSLRDYNGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16591648158Homeobox protein Meis1
4xrs_B1e-16591648158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58467.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638800.0AK363880.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019K09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157077.10.0BEL1-like homeodomain protein 4 isoform X2
SwissprotQ9SW801e-136BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLM0XAX50.0M0XAX5_HORVV; Uncharacterized protein
STRINGMLOC_58467.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-129BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]