PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5850.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 489aa    MW: 52849.9 Da    PI: 6.0591
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5850.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.4e-27218273259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK vkg ++prsYY+Ct  +Cpv+k+ve+sa d+++++i+Y+g+H he
  MLOC_5850.1 218 DDGYNWRKYGQKAVKGGKCPRSYYKCTL-NCPVRKNVEHSA-DGRIIKIVYRGQHCHE 273
                  8*************************97.7***********.***************7 PP
2WRKY102.42.5e-32383441159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct++gC vkk+vers+++p++v++tYeg+H+h+
  MLOC_5850.1 383 LDDGYRWRKYGQKVVRGNPHPRSYYKCTYQGCDVKKHVERSSQEPHAVITTYEGKHTHD 441
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-25214275IPR003657WRKY domain
SuperFamilySSF1182901.06E-21215275IPR003657WRKY domain
SMARTSM007741.7E-29217274IPR003657WRKY domain
PfamPF031064.3E-22218272IPR003657WRKY domain
PROSITE profilePS5081120.954218275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-35370443IPR003657WRKY domain
SuperFamilySSF1182904.84E-29376443IPR003657WRKY domain
PROSITE profilePS5081135.909378443IPR003657WRKY domain
SMARTSM007743.3E-38383442IPR003657WRKY domain
PfamPF031063.4E-25384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAAGQWSAIG DGGGLWSPQA LESLFPDEQP AAAQLGFFGG SLAQLAPPPP LCAIALLGYP  60
QDNFDVFNEQ DLAQVAAQVA QKKELQEKQA ALLHPKVAPQ LAFPKYSILD RVDNSSSFKP  120
ATSVLTPQHV TSVIAASMQG MSTLPSHTGS GSMNTGPTGI LQVLQGSSTT LDSINTGSAG  180
VLQVLQGSST TLDSINTGSA GFLEALQGSS ITLDKPADDG YNWRKYGQKA VKGGKCPRSY  240
YKCTLNCPVR KNVEHSADGR IIKIVYRGQH CHEPPSKRFK DCGDLLNELD ELNDAEEPST  300
RSLLGCQGYY GKPKPITPNG TMVDGLLPTK EEGDEQLSSL SDIREDDGEI RTVDGDVGDA  360
DANERNAPGQ KIIVSTTSDV DLLDDGYRWR KYGQKVVRGN PHPRSYYKCT YQGCDVKKHV  420
ERSSQEPHAV ITTYEGKHTH DVPESRNRSQ ATGSHHCKEQ TYSEQPAASF CSSSEKRKYG  480
TVILNDLAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-33218443878Probable WRKY transcription factor 4
2lex_A2e-33218443878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5850.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654690.0AK365469.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146250.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ703e-67WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A287HNH70.0A0A287HNH7_HORVV; Uncharacterized protein
STRINGMLOC_5850.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-66WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]