PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5850.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 446aa    MW: 48264.6 Da    PI: 5.7761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5850.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27175230259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK vkg ++prsYY+Ct  +Cpv+k+ve+sa d+++++i+Y+g+H he
  MLOC_5850.2 175 DDGYNWRKYGQKAVKGGKCPRSYYKCTL-NCPVRKNVEHSA-DGRIIKIVYRGQHCHE 230
                  8*************************97.7***********.***************7 PP
2WRKY102.62.2e-32340398159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct++gC vkk+vers+++p++v++tYeg+H+h+
  MLOC_5850.2 340 LDDGYRWRKYGQKVVRGNPHPRSYYKCTYQGCDVKKHVERSSQEPHAVITTYEGKHTHD 398
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-25171232IPR003657WRKY domain
SuperFamilySSF1182909.29E-22172232IPR003657WRKY domain
SMARTSM007741.7E-29174231IPR003657WRKY domain
PROSITE profilePS5081120.954175232IPR003657WRKY domain
PfamPF031063.8E-22175229IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-35327400IPR003657WRKY domain
SuperFamilySSF1182904.18E-29333400IPR003657WRKY domain
PROSITE profilePS5081135.909335400IPR003657WRKY domain
SMARTSM007743.3E-38340399IPR003657WRKY domain
PfamPF031063.0E-25341398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAAGQWSAIG DGGGLWSPQA LESLFPDEQP AAAQLGFFGG SLAQLAPPPP LCAIALLGYP  60
QDNFDVFNEQ DLAQVAAQVA QKKELQEKQA ALLHPKGMST LPSHTGSGSM NTGPTGILQV  120
LQGSSTTLDS INTGSAGVLQ VLQGSSTTLD SINTGSAGFL EALQGSSITL DKPADDGYNW  180
RKYGQKAVKG GKCPRSYYKC TLNCPVRKNV EHSADGRIIK IVYRGQHCHE PPSKRFKDCG  240
DLLNELDELN DAEEPSTRSL LGCQGYYGKP KPITPNGTMV DGLLPTKEEG DEQLSSLSDI  300
REDDGEIRTV DGDVGDADAN ERNAPGQKII VSTTSDVDLL DDGYRWRKYG QKVVRGNPHP  360
RSYYKCTYQG CDVKKHVERS SQEPHAVITT YEGKHTHDVP ESRNRSQATG SHHCKEQTYS  420
EQPAASFCSS SEKRKYGTVI LNDLAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33175400878Probable WRKY transcription factor 4
2lex_A1e-33175400878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654690.0AK365469.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146250.10.0probable WRKY transcription factor 3
TrEMBLF2DNK10.0F2DNK1_HORVV; Predicted protein
STRINGMLOC_5850.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-66WRKY DNA-binding protein 3