PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5850.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 428aa    MW: 46056.6 Da    PI: 5.8139
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5850.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.1e-27218273259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK vkg ++prsYY+Ct  +Cpv+k+ve+sa d+++++i+Y+g+H he
  MLOC_5850.4 218 DDGYNWRKYGQKAVKGGKCPRSYYKCTL-NCPVRKNVEHSA-DGRIIKIVYRGQHCHE 273
                  8*************************97.7***********.***************7 PP
2WRKY36.31.1e-11383405123
                  ---SS-EEEEEEE--TT-SS-EE CS
         WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                  ldDgy+WrKYGqK+v+g+++pr+
  MLOC_5850.4 383 LDDGYRWRKYGQKVVRGNPHPRH 405
                  59********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-25214275IPR003657WRKY domain
SuperFamilySSF1182908.63E-22215275IPR003657WRKY domain
SMARTSM007741.7E-29217274IPR003657WRKY domain
PROSITE profilePS5081120.954218275IPR003657WRKY domain
PfamPF031063.6E-22218272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-12370405IPR003657WRKY domain
SuperFamilySSF1182901.57E-9376405IPR003657WRKY domain
PROSITE profilePS5081115.445378404IPR003657WRKY domain
SMARTSM007744.0E-5383424IPR003657WRKY domain
PfamPF031063.0E-7384405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAAGQWSAIG DGGGLWSPQA LESLFPDEQP AAAQLGFFGG SLAQLAPPPP LCAIALLGYP  60
QDNFDVFNEQ DLAQVAAQVA QKKELQEKQA ALLHPKVAPQ LAFPKYSILD RVDNSSSFKP  120
ATSVLTPQHV TSVIAASMQG MSTLPSHTGS GSMNTGPTGI LQVLQGSSTT LDSINTGSAG  180
VLQVLQGSST TLDSINTGSA GFLEALQGSS ITLDKPADDG YNWRKYGQKA VKGGKCPRSY  240
YKCTLNCPVR KNVEHSADGR IIKIVYRGQH CHEPPSKRFK DCGDLLNELD ELNDAEEPST  300
RSLLGCQGYY GKPKPITPNG TMVDGLLPTK EEGDEQLSSL SDIREDDGEI RTVDGDVGDA  360
DANERNAPGQ KIIVSTTSDV DLLDDGYRWR KYGQKVVRGN PHPRHGTFFV LQQCMKKALH  420
SHSREIYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-14212275974WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5850.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3654690.0AK365469.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146250.10.0probable WRKY transcription factor 3
TrEMBLA0A287HNH70.0A0A287HNH7_HORVV; Uncharacterized protein
STRINGMLOC_5850.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-44WRKY DNA-binding protein 3