PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58641.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 353aa    MW: 38453.6 Da    PI: 4.3627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58641.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19123172255
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ kl+g
  MLOC_58641.1 123 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIKLRG 172
                   69*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.393123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-29123182IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-21123181IPR016177DNA-binding domain
SMARTSM003801.7E-35123186IPR001471AP2/ERF domain
PfamPF008479.8E-12123172IPR001471AP2/ERF domain
PRINTSPR003674.5E-10124135IPR001471AP2/ERF domain
CDDcd000183.71E-25131182No hitNo description
PRINTSPR003674.5E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MWPMEEEFFM AVKRTEHVEV TSRSLAASAT GMEGFGGGVE QPKMVRVFCD DFDATDSSSD  60
EEDGERRRVK RYVQEIRLQP AVQVKVEESA PVAKAASATA TATRPRVMVP VRKRKAEAGG  120
ERRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA KVYDSAAIKL RGPDATVNFQ  180
QSEDGEDMEV PAEVAERLPQ PPAGSKNSST SATSYDSCEE SHVAAASPTS VLRSFPQSTL  240
PAAVDGDTAK KPSSSSSTAE TDESSGVFGC SFSGDDFAGE LAPLYSDFDL LSDFAEPPMD  300
FLSNLPEPAF AFTSDCSSSA FQPCPPSPAA LQQADEFFQD ITDLFQIDPL PVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-191231791471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113130RKAEAGGERRFRGVRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690080.0AK369008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198992.10.0ethylene-responsive transcription factor CRF1-like
TrEMBLF2DYN90.0F2DYN9_HORVV; Predicted protein
STRINGMLOC_58641.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-31cytokinin response factor 4