PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58644.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 578aa    MW: 62891.9 Da    PI: 8.4775
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58644.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1853110457
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++t+eq+e+Le++++++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  MLOC_58644.2  53 YVRYTPEQVEALERVYNECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 110
                   6789****************************************************97 PP
2START165.24.6e-522014082204
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++++++ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l v  +g  g+++l+++
  MLOC_58644.2 201 IAEETLTAFMSKATGTAVEWVQMMGMKPGPDSIGIIAVSHNCIGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVFPTGngGTIELIYM 296
                   68999*****************************************************.8888888888**************************** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  
  MLOC_58644.2 297 QTYAPTTLAApRDFWTLRYTCGLEDGSLVICERSLTQSTGGPSgpnTPGFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPK 393
                   ********999****************************9999999*************************************************** PP

                   HHHHHHHHHHTXXXX CS
         START 190 aegaktwvatlqrqc 204
                   + ++k++ a+l++ +
  MLOC_58644.2 394 IVAQKMTIAALRHIR 408
                   **********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.12747111IPR001356Homeobox domain
SMARTSM003895.9E-1549115IPR001356Homeobox domain
SuperFamilySSF466893.59E-1652113IPR009057Homeodomain-like
CDDcd000862.63E-1652112No hitNo description
PfamPF000463.3E-1653110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-1854110IPR009057Homeodomain-like
CDDcd146864.20E-6104143No hitNo description
PROSITE profilePS5084824.652191410IPR002913START domain
CDDcd088751.32E-70195411No hitNo description
Gene3DG3DSA:3.30.530.203.2E-23200383IPR023393START-like domain
SMARTSM002346.2E-43200410IPR002913START domain
SuperFamilySSF559612.47E-38201411No hitNo description
PfamPF018526.4E-50201408IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MTRHRPWPPH PHHPPPPHPL RVAAPAAATD SGAGKMARLS PGAAAPQVDT GKYVRYTPEQ  60
VEALERVYNE CPKPSSLRRQ QIIRDCPILC NIEPKQIKVW FQNRRCREKQ RKESSRMQTV  120
NRKLTAMNKL LMEENDRLQK QVSRLVYENV SAKSLKTKIH NASAATTDTS CESVVTSGQQ  180
QALAAPRPQR DANNPAGLLA IAEETLTAFM SKATGTAVEW VQMMGMKPGP DSIGIIAVSH  240
NCIGVAARAC GLVSLEPTKV AEILKDRPSW YRDCRCVDIL HVFPTGNGGT IELIYMQTYA  300
PTTLAAPRDF WTLRYTCGLE DGSLVICERS LTQSTGGPSG PNTPGFIRAE VLPSGYLIRP  360
CEGGGSMIHI VDHVDLDAWS VPEVLRPLYE SPKIVAQKMT IAALRHIRQI AHESSGEIPY  420
GAGRQPAVLR TFSQRLSRGF NDAVSGFPDD GWSLLTSDGA EDITITVNSS PNKLVGSHIS  480
PSPLFSAIGG GILCAKASML VQDVPPALLV RFLREHRSEW ADPGVDAYSA ASLRASPYAV  540
PGLRAGGFMG NQVILPLAHT LEHEEVTSQF SPFSVLSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58644.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163543.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLF2D7P80.0F2D7P8_HORVV; Predicted protein
STRINGMLOC_58644.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]