PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58725.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 392aa    MW: 41354.3 Da    PI: 6.3892
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58725.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18265299135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  MLOC_58725.1 265 CLHCETDKTPQWRTGPLGPKTLCNACGVRYKSGRL 299
                   99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-711349IPR016679Transcription factor, GATA, plant
SMARTSM004013.9E-17259309IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.585259295IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14259296IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.04E-15260322No hitNo description
CDDcd002021.73E-14264311No hitNo description
PfamPF003207.9E-16265299IPR000679Zinc finger, GATA-type
PROSITE patternPS003440265290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEATATAPDC DAHGYYGRDN KKGPDLFVVD DLLALPCDDD EEDEEAPPFL PAATAVVKQE  60
AAGFGNASAD SSTVTALDSC SNSFSGLADG DFSGGLCEPY DQLAELEWLS NYMGEGEESF  120
ATEDLHKLQL ISGIPSGGFP TANGPPAPAT TAAASASASA TAQPGVFLPE GPVPAKARSK  180
RSRVAPGNWS SRLLVLPPAP ASPPSPASMA ISPAESGVSA QAFHVKKPSK PAKKKEVPPQ  240
AQPVTVSSPT APSGVTAAAN EGRRCLHCET DKTPQWRTGP LGPKTLCNAC GVRYKSGRLV  300
PEYRPAASPT FVTSRHSNSH RKVLELRRQR EMHHQPSQHL QQHVVPGGVG RIMHMESHLL  360
FDGPAAPPII GGGDDFLIHH RLGTTDYRQQ LI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3767510.0AK376751.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3134K02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180765.10.0GATA transcription factor 12-like
TrEMBLF2EKS30.0F2EKS3_HORVV; GATA transcription factor
STRINGMLOC_58725.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-61GATA transcription factor 12