PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58838.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 167aa    MW: 19369.7 Da    PI: 10.0863
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58838.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000282448123
                  EEETTTTEEESSHHHHHHHHHH..T CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                  + C+ C+k ++  +++++H+++  H
  MLOC_58838.2 24 FFCSLCNKQYKLAYEFESHLSSydH 48
                  67*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.22E-6759No hitNo description
PROSITE patternPS0002802648IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MTIQVTAERE QKIRSEVKEI QKTFFCSLCN KQYKLAYEFE SHLSSYDHNH RKRFKEMKEM  60
QSGNSGNRDD RQKREQQREE KELAKFAQLA DAHRKQQKEK QEQPEISGDQ ATSKNLPTPG  120
NQDQRRTLKF GFSKMTPSKA PVGNMSKKPK IATKVPSVFG NDSDEDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58838.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2488230.0AK248823.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf8m08, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166155.11e-112G patch domain-containing protein 8
TrEMBLA0A287GVF01e-121A0A287GVF0_HORVV; Uncharacterized protein
STRINGMLOC_58838.51e-116(Hordeum vulgare)