PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59184.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 196aa    MW: 21364.4 Da    PI: 4.8751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59184.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.9e-097302347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+ Ia++++ gRt++++k++w++ 
     MLOC_59184.1  7 RWSQIASHLP-GRTDNEIKNFWNSC 30
                     6*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.969135IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-13648IPR009057Homeodomain-like
SuperFamilySSF466891.25E-8641IPR009057Homeodomain-like
CDDcd001679.15E-7728No hitNo description
PfamPF002497.9E-7730IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
TGRNQCRWSQ IASHLPGRTD NEIKNFWNSC LKKKLRQRGI DPSTHKPISG VAGVDLDQPS  60
KEKKPQAADG ALKQQQLQVF DPFPAADTFG AGFDGAGMPL YDHLGGKDAV GFVDYSSVLD  120
VSENLGYGES SSNSSNWNSA PEANNALEGE ALHWASESKV EPFVGYAGGD DDKFALPCHG  180
QQEHSMAHFD FNLEYF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59184.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3725340.0AK372534.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3004I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199496.11e-112myb-related protein Hv33-like
SwissprotP200278e-49MYB3_HORVU; Myb-related protein Hv33
TrEMBLF2E8R01e-135F2E8R0_HORVV; Predicted protein
STRINGMLOC_59184.11e-145(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-21myb domain protein 61