PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59224.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 214aa    MW: 23389.6 Da    PI: 7.5077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59224.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-163788255
           AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+GVr++   grWv+e+r+    g +  r +lg+f tae+Aa+a++aa ++l g
  MLOC_59224.1 37 LYRGVRRRGPAGRWVCEVRVL---GmRGSRLWLGTFTTAEMAARAHDAAVLALSG 88
                  69***************9994...6555*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-103687IPR001471AP2/ERF domain
CDDcd000181.71E-213698No hitNo description
SMARTSM003801.0E-2037102IPR001471AP2/ERF domain
PROSITE profilePS5103220.2973796IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-273798IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-183798IPR016177DNA-binding domain
PRINTSPR003671.7E-53849IPR001471AP2/ERF domain
PRINTSPR003671.7E-56278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDAADAASPC DGHRTVWSEP PKRPAGRTKF KETRHPLYRG VRRRGPAGRW VCEVRVLGMR  60
GSRLWLGTFT TAEMAARAHD AAVLALSGRA ACLNFADSAW RMLPLLAGPF STAKEIKDAV  120
AVAVLAFQRQ HPVASTAPMS PARTAVDEKE VDGSPAPSAL FMSSELLNEH WFGGMDAGSC  180
YSEGMFIESP DTRPWREDLE LGGVQTPPWS YLFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1435951271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1515450.0DQ151545.1 Hordeum vulgare subsp. vulgare cultivar Morex CBF14 (CBF14) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167745.11e-149dehydration-responsive element-binding protein 1B-like
SwissprotQ8GUW45e-49DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B
TrEMBLQ3SAT41e-155Q3SAT4_HORVV; CBF14
STRINGMLOC_59224.11e-155(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-35C-repeat/DRE binding factor 2