PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59246.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 87aa    MW: 9132.93 Da    PI: 8.503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59246.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.84.6e-181382259
                  EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  rsYY+Ct ++C+v+k++er+++dp++v +tY+g+Hnh+
  MLOC_59246.1  1 RSYYKCTAENCNVRKQIERASTDPRCVLTTYTGRHNHD 38
                  9************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007746.7E-8139IPR003657WRKY domain
SuperFamilySSF1182909.15E-14140IPR003657WRKY domain
PfamPF031061.2E-11138IPR003657WRKY domain
PROSITE profilePS5081120.507140IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-16140IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
RSYYKCTAEN CNVRKQIERA STDPRCVLTT YTGRHNHDPP GRGAGAAAAA GAGGGSSSDP  60
VPSTVNPSAS TLHQPSGIHQ LKEENRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-141403877Probable WRKY transcription factor 4
2lex_A1e-141403877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638031e-143AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197516.12e-39probable WRKY transcription factor 58
TrEMBLA0A287SEN13e-55A0A287SEN1_HORVV; Uncharacterized protein
TrEMBLM0XDY23e-57M0XDY2_HORVV; Uncharacterized protein
STRINGMLOC_59246.15e-58(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.18e-16WRKY DNA-binding protein 3