PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59259.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 305aa    MW: 32050.5 Da    PI: 6.5133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59259.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.99e-33138195259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp+vv++tYeg+H h+
  MLOC_59259.2 138 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTVVITTYEGQHCHH 195
                   8*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-33122196IPR003657WRKY domain
SuperFamilySSF1182904.32E-28129196IPR003657WRKY domain
PROSITE profilePS5081129.712132197IPR003657WRKY domain
SMARTSM007743.4E-38137196IPR003657WRKY domain
PfamPF031061.2E-25138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAGAAGERPE GVGGGGDWPP FAGDAFAEYS SSVFAELGGW PDGLGAGTGE LQSLDLPEAS  60
ASASVPLARP DEMLPAASSC SSGDGAPAAA TENADRPQSA ADAASMKPAA ATATKKGQKR  120
ARQQRFAFVT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY YRCTNSKCTV KKRVERSSED  180
PTVVITTYEG QHCHHQTSFQ RGGGMHFHGA ATVALAEQMS FVPTQQLYNL PPLRRLQMNP  240
GSSESAVSSM PPSLQQLNGG DDLGRSTSYS PTASAVQTPS SLVPPDVSFD MGLLGDIVPP  300
GVRNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-261301941074Probable WRKY transcription factor 4
2lex_A8e-261301941074Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59259.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3702990.0AK370299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108G21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173159.11e-165probable WRKY transcription factor 57
TrEMBLF2E2C80.0F2E2C8_HORVV; Predicted protein
STRINGMLOC_59259.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.26e-49WRKY DNA-binding protein 57