PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59262.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 206aa    MW: 23900.1 Da    PI: 9.4526
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59262.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.4e-30959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krien+snrqvtfskR+ngilKKA+E+SvLCdaev v++fss gkly+++s
  MLOC_59262.1  9 KRIENQSNRQVTFSKRKNGILKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 59
                  79***********************************************96 PP
2K-box69.31.2e-2371145175
         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                   yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l++  +k++e++ +
  MLOC_59262.1  71 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTSLHEKQMEHYDR 145
                   89999999**************************************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.828161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.82E-42280No hitNo description
SuperFamilySSF554553.4E-34296IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014867.0E-1482143IPR002487Transcription factor, K-box
PROSITE profilePS5129710.07384174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MGRGKIEIKR IENQSNRQVT FSKRKNGILK KAKEISVLCD AEVGVVVFSS AGKLYDFCSP  60
KTSLSRILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE  120
LIMIEEALDN GLTSLHEKQM EHYDRLMKHV WPSFAYMIMC SAYLLIIMQF FHTLPSSIVL  180
LVNCRVRCWK MRTSCWPLKC TSMISP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-20186178Myocyte-specific enhancer factor 2B
1tqe_Q2e-20186178Myocyte-specific enhancer factor 2B
1tqe_R2e-20186178Myocyte-specific enhancer factor 2B
1tqe_S2e-20186178Myocyte-specific enhancer factor 2B
6c9l_A2e-20186178Myocyte-specific enhancer factor 2B
6c9l_B2e-20186178Myocyte-specific enhancer factor 2B
6c9l_C2e-20186178Myocyte-specific enhancer factor 2B
6c9l_D2e-20186178Myocyte-specific enhancer factor 2B
6c9l_E2e-20186178Myocyte-specific enhancer factor 2B
6c9l_F2e-20186178Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7403070.0KU740307.1 Hordeum vulgare PISTILLATA-like MADS-box transcription factor PI-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172714.11e-103MADS-box transcription factor 2
SwissprotQ407027e-91MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A446NYK21e-115A0A446NYK2_TRITD; Uncharacterized protein
STRINGMLOC_59262.21e-104(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]