PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59305.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 227aa    MW: 24203.3 Da    PI: 10.0313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59305.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19655154
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                  ++++GVr+++ +g+Wv+eIr+p     r +r++lg+f taeeAa+a+++a+  + 
  MLOC_59305.3  6 KKFRGVRQRH-WGSWVSEIRHPL----RkRRVWLGTFETAEEAARAYDEAAILMS 55
                  59*******9.**********72....45*********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.58E-32665No hitNo description
PROSITE profilePS5103222.471764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-33764IPR001471AP2/ERF domain
PfamPF008476.8E-13754IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-21765IPR016177DNA-binding domain
SMARTSM003801.9E-39770IPR001471AP2/ERF domain
PRINTSPR003671.4E-10819IPR001471AP2/ERF domain
PRINTSPR003671.4E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVQSKKKFRG VRQRHWGSWV SEIRHPLRKR RVWLGTFETA EEAARAYDEA AILMSGRNAK  60
TNFPVPRSAN GEIIVAPAAA ARDIRGGVGS SSSGAAGASS LSQILSAKLR KCCKTPSPSL  120
TCLRLDTEKS HIGVWQKRAG ARADSSWVMT VELNKEPAAA APPTPSDSTV SATPSSSTST  180
STTGSPPEAM EDEERIALQM IEELLSRSSP ASPSHGLLHG EEGSLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16672470ATERF1
3gcc_A2e-16672470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59305.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748790.0AK374879.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3079A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193157.11e-119ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI333e-78WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLB1H0T41e-161B1H0T4_HORVV; Predicted protein
STRINGMLOC_59305.11e-162(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-59ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]