PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59439.10
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 255aa    MW: 29413.4 Da    PI: 9.3352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59439.10genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.51.7e-11301101797
                    E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
             B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                    ++ k++a++h   ++es  ++l+   ++++W  +++  ++++ + +++ W++Fv +n+++e D+++F  ++   +f+++v+++
  MLOC_59439.10  30 TITKECAAAHF--PHESASVILQRpGESKKWYPRFCKGNGGSIHKIRGEWSDFVCDNHVEEADICIFVSTKGgGRFTFTVHLI 110
                    79999999997..446778999994556*******65555555*************************776558888888876 PP
2B356.26.3e-181842522999
                    -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                    +k+e  + +l +++g++W+ ++++r++++r+ l+kGW eF+ +n+L++gD ++F+l+++ ++ ++ v+++++
  MLOC_59439.10 184 PKKE--QTILLQRTGKEWQTQMRIRRGRRRF-LEKGWCEFATDNRLQVGDLCLFELKRNrRKLTMIVHIISR 252
                    3222..3677889*********999999885.999**********************998********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.3819113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-1328111IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-1230108No hitNo description
SuperFamilySSF1019361.82E-1330111IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-1030111IPR003340B3 DNA binding domain
PROSITE profilePS508639.03743113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-20147254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-19149255IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-13153251No hitNo description
SMARTSM010194.4E-7155253IPR003340B3 DNA binding domain
PfamPF023621.8E-16174252IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393190253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
QLKHILAEFC ILFICLFVYG ITLCPICDQT ITKECAAAHF PHESASVILQ RPGESKKWYP  60
RFCKGNGGSI HKIRGEWSDF VCDNHVEEAD ICIFVSTKGG GRFTFTVHLI HSESKAHACP  120
FVPPYILPKT RFLSPLQKII VEDKAQAIQL EAHFYVAIMN KINVGVKGHY NLEFGAKYAA  180
VYLPKKEQTI LLQRTGKEWQ TQMRIRRGRR RFLEKGWCEF ATDNRLQVGD LCLFELKRNR  240
RKLTMIVHII SRDQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242LKRNRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59439.10
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732050.0AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171944.11e-130B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV211e-52Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A287NAR41e-170A0A287NAR4_HORVV; Uncharacterized protein
STRINGMLOC_59439.81e-167(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-07B3 family protein