PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59439.11
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 239aa    MW: 27616.2 Da    PI: 10.2142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59439.11genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3375.9e-1213941697
                   EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
             B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97
                   l++ k++a++h   ++es  ++l+   ++++W  +++  ++++ + +++ W++Fv +n+++e D+++F  ++   +f+++v+++
  MLOC_59439.11 13 LTITKECAAAHF--PHESASVILQRpGESKKWYPRFCKGNGGSIHKIRGEWSDFVCDNHVEEADICIFVSTKGgGRFTFTVHLI 94
                   899********7..446778999994556*******65555555*************************776558888888876 PP
2B356.45.5e-181682362999
                    -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                    +k+e  + +l +++g++W+ ++++r++++r+ l+kGW eF+ +n+L++gD ++F+l+++ ++ ++ v+++++
  MLOC_59439.11 168 PKKE--QTILLQRTGKEWQTQMRIRRGRRRF-LEKGWCEFATDNRLQVGDLCLFELKRNrRKLTMIVHIISR 236
                    3222..3677889*********999999885.999**********************998********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.03E-14192No hitNo description
SuperFamilySSF1019361.45E-14195IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-14195IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0073597IPR003340B3 DNA binding domain
PfamPF023623.3E-101395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-20131238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-19133239IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-14137235No hitNo description
SMARTSM010194.4E-7139237IPR003340B3 DNA binding domain
PfamPF023621.6E-16158236IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393174237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRKSNVRPLY PSLTITKECA AAHFPHESAS VILQRPGESK KWYPRFCKGN GGSIHKIRGE  60
WSDFVCDNHV EEADICIFVS TKGGGRFTFT VHLIHSESKA HACPFVPPYI LPKTRFLSPL  120
QKIIVEDKAQ AIQLEAHFYV AIMNKINVGV KGHYNLEFGA KYAAVYLPKK EQTILLQRTG  180
KEWQTQMRIR RGRRRFLEKG WCEFATDNRL QVGDLCLFEL KRNRRKLTMI VHIISRDQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219226LKRNRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59439.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732050.0AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171944.11e-138B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV213e-56Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A287NAR40.0A0A287NAR4_HORVV; Uncharacterized protein
STRINGMLOC_59439.81e-179(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-07B3 family protein