PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59439.12
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 83aa    MW: 10043.8 Da    PI: 10.9182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59439.12genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.5e-1913803099
                   ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
             B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                   k+e  + +l +++g++W+ ++++r++++r+ l+kGW eF+ +n+L++gD ++F+l+++ ++ ++ v+++++
  MLOC_59439.12 13 KKE--QTILLQRTGKEWQTQMRIRRGRRRF-LEKGWCEFATDNRLQVGDLCLFELKRNrRKLTMIVHIISR 80
                   222..4677889*********999999885.999**********************998********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.789181IPR003340B3 DNA binding domain
SMARTSM010190.0014281IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-17483IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-19582IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-13579No hitNo description
PfamPF023621.8E-171080IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
EFGAKYAAVY LPKKEQTILL QRTGKEWQTQ MRIRRGRRRF LEKGWCEFAT DNRLQVGDLC  60
LFELKRNRRK LTMIVHIISR DQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16370LKRNRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59439.12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732051e-139AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171944.12e-42B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV221e-23Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A287NAR92e-53A0A287NAR9_HORVV; Uncharacterized protein
TrEMBLA0A287NAU48e-55A0A287NAU4_HORVV; Uncharacterized protein
STRINGMLOC_59439.89e-53(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]