PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59516.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 242aa    MW: 27246.8 Da    PI: 8.3239
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59516.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.37.5e-142158341
           TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                  +k+C+Ck skClkkYCeCfa+g++C++ C+C++C N+ +
  MLOC_59516.8 21 RKHCKCKYSKCLKKYCECFASGSYCKD-CNCKNCYNNVR 58
                  699************************.********976 PP
2TCR50.54.2e-16105145141
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   k++kgC+Ck+s+ClkkYCeCf ++  Cse+CkC dCkN e+
  MLOC_59516.8 105 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 145
                   589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-121959IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.18920145IPR005172CRC domain
PfamPF036386.5E-102256IPR005172CRC domain
SMARTSM011143.2E-18105146IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12108143IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
WNARYPQSET SWESTDRTSG RKHCKCKYSK CLKKYCECFA SGSYCKDCNC KNCYNNVRHE  60
AARQDAIDAA IERNPMAFMP KIENIPPHAA QNREFKVAEG PLVGKHTKGC HCKRSECLKK  120
YCECFRSNIL CSENCKCMDC KNYESSEDRK AIRRITQHQQ HLVYAHHMQN PALVGITGPY  180
AALSHSAEKL SNLSVASSGR DQLISNNDSS QVTSSLLTHV PIEGTGTKSD VEVEPHGVTY  240
RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-282115611134Protein lin-54 homolog
5fd3_B2e-282115611134Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59516.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721950.0AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198634.11e-154protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD14e-60TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A287HB390.0A0A287HB39_HORVV; Uncharacterized protein
TrEMBLM0XF650.0M0XF65_HORVV; Uncharacterized protein
STRINGMLOC_59516.41e-180(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-41Tesmin/TSO1-like CXC domain-containing protein