PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59560.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Nin-like
Protein Properties Length: 250aa    MW: 28219.6 Da    PI: 8.9383
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59560.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.31.3e-27124173352
        RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl
  MLOC_59560.1 124 RVLTFELVSQYFYMPITQAARELNVGLTILKKRCRELGIPRWPHRKLKSL 173
                   6699********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.667110193IPR003035RWP-RK domain
PfamPF020422.0E-22126173IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPPASGLMGE VFGMIVTCLK RRRSSAVYPS RASVANHCAL STLLFRRAAV CKSSRAAPCL  60
VPCNTGDLDT SFEDDLLRCW EAMEQSDNST EVSGKGLPLP LPCYGEENGS ASNATRADRV  120
RSERVLTFEL VSQYFYMPIT QAARELNVGL TILKKRCREL GIPRWPHRKL KSLRTLINDV  180
EVLQEAGKAD DDGQLRALVE MLEQERRLLE QKPYVELEEK TKRLRQACFK ASYKKRRLLA  240
LEPGEASKYY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164800.11e-115protein RKD4-like
TrEMBLA0A287W3I41e-180A0A287W3I4_HORVV; Uncharacterized protein
STRINGMLOC_59560.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-38RWP-RK domain-containing protein