PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_59560.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 242aa MW: 27699.4 Da PI: 5.4834

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_59560.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.3	1.3e-27	116	165	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl MLOC_59560.2 116 RVLTFELVSQYFYMPITQAARELNVGLTILKKRCRELGIPRWPHRKLKSL 165 6699********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.667	102	185	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-22	118	165	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
SSFSFHATSF WPYGRSFWHD SYLLEEEALL CSLPFPSFGC QPLCSIDPAV SQSSSLQGDL 60 DTSFEDDLLR CWEAMEQSDN STEVSGKGLP LPLPCYGEEN GSASNATRAD RVRSERVLTF 120 ELVSQYFYMP ITQAARELNV GLTILKKRCR ELGIPRWPHR KLKSLRTLIN DVEVLQEAGK 180 ADDDGQLRAL VEMLEQERRL LEQKPYVELE EKTKRLRQAC FKASYKKRRL LALEPGEASK 240 YY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_59560.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164800.1	1e-149	protein RKD4-like
TrEMBL	A0A287W3R7	1e-168	A0A287W3R7_HORVV; Uncharacterized protein
STRING	EMT20433	1e-148	(Aegilops tauschii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-38	RWP-RK domain-containing protein