PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59591.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 229aa    MW: 24860.3 Da    PI: 8.6112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59591.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.1e-21131365128
           NAM   5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +r +Pt+ e v++yL + ++g++l+  e  i++v+i  +eP+dL +      + +a++ + +fF++ ++k+ ++ ++ r++  g+W  + k++e+ +
  MLOC_59591.1  13 YRLNPTEVEAVTYYLPRLLSGETLHGVEKlIHDVEISGCEPKDLAAryapvpQ-AAGSGDRFFFTTCKSKNGSKLQSVRSAGGGTWTIQ-KTTEISH 107
                   689********************6665555**************853555432.2344588*************************966.6688988 PP

           NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     g++vg  k L f     +kg++t Wvm+eyr 
  MLOC_59591.1 108 -AGAKVGEVKNLSFK----KKGKSTGWVMEEYRC 136
                   .8999*********8....78899********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.7759156IPR003441NAC domain
PfamPF023652.5E-1312135IPR003441NAC domain
SuperFamilySSF1019412.88E-2113154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEEFDVDGIF QHYRLNPTEV EAVTYYLPRL LSGETLHGVE KLIHDVEISG CEPKDLAARY  60
APVPQAAGSG DRFFFTTCKS KNGSKLQSVR SAGGGTWTIQ KTTEISHAGA KVGEVKNLSF  120
KKKGKSTGWV MEEYRCLLPE ATVAEGVKVF CKMHLAQHAP APARQESAAY KLQEPQPEAV  180
TAQRRPAPAA ASDPHPPRPN KRMRGAVPVP VPAPATPSFT DAAPVFLPD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59591.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732720.0AK373272.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3025L12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197295.11e-126uncharacterized protein LOC109783104
TrEMBLA0A287WFP71e-168A0A287WFP7_HORVV; Uncharacterized protein
STRINGMLOC_59591.41e-169(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-15NAC domain containing protein 58