PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5971.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 309aa    MW: 32672.9 Da    PI: 5.066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5971.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.81.2e-24113172258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  +Dg  WrKYGqKe+++s++pr Y+rCt++   gCp++++v++s++dp++ +itY g+H++
  MLOC_5971.1 113 EDGLIWRKYGQKEIHNSTHPRLYFRCTYKhdsGCPATRQVQQSEDDPSLYVITYFGDHTC 172
                  79**************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-25106172IPR003657WRKY domain
SuperFamilySSF1182901.57E-23109173IPR003657WRKY domain
SMARTSM007742.8E-36112174IPR003657WRKY domain
PfamPF031061.1E-24113172IPR003657WRKY domain
PROSITE profilePS5081119.198113170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAALVTPGPG GCSTVSELVG QGRDSAAVLE ALLRGASSPD HAGIRELAAE ILRCCDRALA  60
ALHGGDGAVV DVAGGRKRKP GPGGPDNQTR PKRRMRASSG EKAARVERRR TAEDGLIWRK  120
YGQKEIHNST HPRLYFRCTY KHDSGCPATR QVQQSEDDPS LYVITYFGDH TCCQGDAAGA  180
GLDGDDVKMQ PFVINFGSAT PSGGSPWLSS SNNTNDGRRS ESGTSHSSQA VCSPEEFGVK  240
EAKVESTSES GSQPADPAAA ADLSSSADFS CASPAWDPLS GCLGWEHFGD SPFDCDTEFM  300
DFDAIPLFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-23110172668OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2852060.0KT285206.1 Triticum aestivum WRKY transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177373.10.0WRKY transcription factor 44-like
TrEMBLA0A446K4Q80.0A0A446K4Q8_TRITD; Uncharacterized protein
STRINGMLOC_5971.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-23WRKY DNA-binding protein 70