PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5971.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 215aa    MW: 23226.2 Da    PI: 4.4685
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5971.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.76.4e-251978258
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                 +Dg  WrKYGqKe+++s++pr Y+rCt++   gCp++++v++s++dp++ +itY g+H++
  MLOC_5971.2 19 EDGLIWRKYGQKEIHNSTHPRLYFRCTYKhdsGCPATRQVQQSEDDPSLYVITYFGDHTC 78
                 79**************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-251278IPR003657WRKY domain
SuperFamilySSF1182908.11E-241579IPR003657WRKY domain
SMARTSM007742.8E-361880IPR003657WRKY domain
PfamPF031065.8E-251978IPR003657WRKY domain
PROSITE profilePS5081119.1981976IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MRASSGEKAA RVERRRTAED GLIWRKYGQK EIHNSTHPRL YFRCTYKHDS GCPATRQVQQ  60
SEDDPSLYVI TYFGDHTCCQ GDAAGAGLDG DDVKMQPFVI NFGSATPSGG SPWLSSSNNT  120
NDGRRSESGT SHSSQAVCSP EEFGVKEAKV ESTSESGSQP ADPAAAADLS SSADFSCASP  180
AWDPLSGCLG WEHFGDSPFD CDTEFMDFDA IPLFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-231678668OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5971.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2852060.0KT285206.1 Triticum aestivum WRKY transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177373.11e-128WRKY transcription factor 44-like
TrEMBLA0A287G3Q81e-158A0A287G3Q8_HORVV; Uncharacterized protein
TrEMBLM0XG051e-158M0XG05_HORVV; Uncharacterized protein
STRINGMLOC_5971.11e-158(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-21WRKY DNA-binding protein 70