PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60074.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 108aa    MW: 11794.1 Da    PI: 7.7575
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60074.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.7e-331670155
       G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl
  MLOC_60074.1 16 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 70
                  58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8141373IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-321571IPR009057Homeodomain-like
SuperFamilySSF466891.16E-181571IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-251771IPR006447Myb domain, plants
PfamPF002495.9E-101869IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGSNDGPNSK ASLAARQRLR WTDELHEQFV EAVTQLGGPD RATPKGVLRI MGTPGLTIYH  60
VKSHLQKYRL AKYIPDSSAD GNKADNKDPG DSLAGLDGSS YVYTYDQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-261673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-261673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-261673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-261673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60074.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657331e-166AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13.
GenBankAK3738551e-166AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14.
GenBankAK3752401e-166AK375240.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3089A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180683.13e-67myb family transcription factor PHL7-like isoform X1
RefseqXP_020180688.13e-67myb family transcription factor PHL7-like isoform X1
RefseqXP_020180697.13e-67myb family transcription factor PHL7-like isoform X1
RefseqXP_020180704.13e-67myb family transcription factor PHL7-like isoform X1
RefseqXP_020180710.13e-67myb family transcription factor PHL7-like isoform X1
RefseqXP_020180716.12e-67myb family transcription factor PHL7-like isoform X2
RefseqXP_020180725.12e-67myb family transcription factor PHL7-like isoform X2
SwissprotQ9SJW06e-47PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A453KKZ68e-73A0A453KKZ6_AEGTS; Uncharacterized protein
STRINGMLOC_60074.62e-67(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-49G2-like family protein