PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60074.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 277aa    MW: 30121.4 Da    PI: 6.4254
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60074.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.9e-321670155
       G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl
  MLOC_60074.4 16 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 70
                  58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8141373IPR017930Myb domain
SuperFamilySSF466891.97E-171570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-311571IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-251771IPR006447Myb domain, plants
PfamPF002493.8E-91869IPR001005SANT/Myb domain
PfamPF143798.5E-24102148IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGSNDGPNSK ASLAARQRLR WTDELHEQFV EAVTQLGGPD RATPKGVLRI MGTPGLTIYH  60
VKSHLQKYRL AKYIPDSSAD GNKADNKDPG DSLAGLDGSS GMQISEALKL QMEVQKRLHE  120
QLEVQRQLQL RIEAQGKYLK KIIEEQQRFG GIKSETPGAG ATVTASSDQF PDSERTDPST  180
PAPTSESASQ GAAFKRDSGS QTEAIKSPCH DEPLLTADSN CHPGSPTLSP KHERAAKRQR  240
SSDAEFPEAE LSLPQHIFES SSGPEFQQCS VPYFSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60074.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657330.0AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13.
GenBankAK3738550.0AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14.
GenBankAK3752400.0AK375240.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3089A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180683.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180688.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180697.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180704.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180710.10.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW02e-93PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLF2DPB50.0F2DPB5_HORVV; Predicted protein
TrEMBLF2EGG30.0F2EGG3_HORVV; Predicted protein (Fragment)
STRINGMLOC_60074.60.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-64G2-like family protein