PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_60153.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 167aa MW: 18386.7 Da PI: 9.7845

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_60153.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.8	2.1e-40	9	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrF Pt++el+ +yL+++++g++ ++++vi+ vd+y+++P++L++ + ++ ++w+fF++r++++ +g r+ r+t sgyWkatg+ v+ MLOC_60153.1 9 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSYHPSHLRAmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWKATGSPSCVF 105 59*******************9995666678**********8434532223566********************************* PP NAM 94 sk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++++g+k+t+vfy+grap+g kt+W m+ey++ MLOC_60153.1 106 SSsssaagsNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 147 9988888877788*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-42	5	151	IPR003441	NAC domain
PROSITE profile	PS51005	41.706	8	167	IPR003441	NAC domain
Pfam	PF02365	8.8E-23	10	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MTTPSSGGTP GFRFYPTEDE LLGFYLRHRL AGTTRPHVDR VIPVVDVYSY HPSHLRAMAG 60 EASVQDAEQW FFFCPRAERE LRGGRPARTT PSGYWKATGS PSCVFSSSSS AAGSNSKVIG 120 VKRTMVFYQG RAPTGAKTTW KMNEYKAVAA DYDTMTGHQT PAPLRAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-27	10	148	19	143	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-27	10	148	19	143	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-27	10	148	19	143	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-27	10	148	19	143	NO APICAL MERISTEM PROTEIN
3swm_A	6e-27	10	148	22	146	NAC domain-containing protein 19
3swm_B	6e-27	10	148	22	146	NAC domain-containing protein 19
3swm_C	6e-27	10	148	22	146	NAC domain-containing protein 19
3swm_D	6e-27	10	148	22	146	NAC domain-containing protein 19
3swp_A	6e-27	10	148	22	146	NAC domain-containing protein 19
3swp_B	6e-27	10	148	22	146	NAC domain-containing protein 19
3swp_C	6e-27	10	148	22	146	NAC domain-containing protein 19
3swp_D	6e-27	10	148	22	146	NAC domain-containing protein 19
4dul_A	7e-27	10	148	19	143	NAC domain-containing protein 19
4dul_B	7e-27	10	148	19	143	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_60153.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094245	1e-31	FP094245.1 Phyllostachys edulis cDNA clone: bphylf035k07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185458.1	2e-97	NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	4e-56	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A287QXF7	1e-119	A0A287QXF7_HORVV; Uncharacterized protein
TrEMBL	A0A287QXM1	1e-119	A0A287QXM1_HORVV; Uncharacterized protein
TrEMBL	A0A287QXP8	1e-119	A0A287QXP8_HORVV; Uncharacterized protein
STRING	MLOC_60153.1	1e-121	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-52	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]