PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6017.11
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 206aa    MW: 22289.3 Da    PI: 9.9968
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6017.11genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-1797133135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MLOC_6017.11  97 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 133
                   **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.3142567IPR010402CCT domain
PfamPF062038.1E-162566IPR010402CCT domain
SMARTSM004011.4E-991144IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-1194141No hitNo description
CDDcd002025.12E-1496139No hitNo description
Gene3DG3DSA:3.30.50.102.8E-1496136IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-1497133IPR000679Zinc finger, GATA-type
PROSITE patternPS00344097124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVLPSRRENR GYEDLLQRTD IPAKRVASLI RFREKRKGRN FDKQIRYAVR KEVAHRMQRR  60
KGQFVGSANL EGESPSPGCD PASQGSGQDF LSRESKCQNC GTSEKMTPAM RRGPAGPRTL  120
CNACGLMWAN KGTLRSCSKA KVEAPMLAIE QCNAAVAQCQ TGTDVKALPA PSNYDVTPSK  180
GEAMDNSVTA TVAAAAIEGA PKAQSE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6017.11
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3547461e-158AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175747.11e-141GATA transcription factor 18-like isoform X4
SwissprotQ10F251e-104GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A287MZB31e-150A0A287MZB3_HORVV; Uncharacterized protein
STRINGMLOC_6017.111e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-50ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]