PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60274.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 887aa    MW: 95971.9 Da    PI: 6.4145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60274.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000686917281355
                   HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  MLOC_60274.5 691 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 728
                   67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-305160IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.829678727IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-4691740IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MAVGEALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGYC GHTPCPAGSE ASQARATELG  60
CSAAVDSICS LVRKDMAEQV HVVGEGTIGR VAFTGTHQWI IHGTADDHGL SSEVASEMHY  120
QFRAGIKTIA IIPVLPRGVL QLGSTGVVME NTSFVMHAKK LCSQLNQRSS MAVSASVKST  180
SNQSRPLHGA SNIQAADSSF SQFPVIREQY RRADSATASS SKSLNASLFE AAQQNGLTAR  240
EHLVYSKPND MFVQQPSYCV SRLGSNTQSA AISSDLIPSS LASVEQQQML MNTIGQLEFG  300
SGTDLARSAL LKSLLYRNPF MHDTSDMKLS HGRVGLSHGT AGHGSYGFLP GSAGVVSTTL  360
CTSSQVSEQG SHSSSGMLRQ KQPPVSCNVP QSSEFTMKMV RQEGRSSEGA LPVSSQSDVQ  420
ISNCLNGISQ ENLLSRSGHM HKDQNTNRAN DPHVAVSTQG VKNMDACMLP GMPGETAHSL  480
LLQPTWDNDL FDIFGSEFHQ LGHNVDANLV SSCDAKSHSL DRDATEPSIC LDSSSLFSSL  540
DNDFPCSGIF SLTNTDQLLD AVISNVNPSS KQSSDDNASC KTALTDIPNI CHFGLEELKQ  600
CDSSGIPSTV IKNESAQIVK QPYYFDKTED GCHSQNNGAQ KSQIRLWIEN GQNMKCESAS  660
ASNSKGLDAP SKSNRKRSRP GESSKARPKD RQLIQDRIKE LREMVPNGAK CSIDALLEKT  720
VKHMLFLQSV TKHADKLKDS TESKILGSEN GPVWKDYFEG GATWAFDVGS QSMTCPIIVE  780
DLDRPRQMLV EMICEDRGIF LEIADFIKGL GLTILRGVME ARKSKIWARF TVEANRDVTR  840
MEIFLSLVRL LEPNCDGSGA AENPGNSVNM PLGLVHQPVI PATGGIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60274.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178283.10.0transcription factor LHW-like isoform X2
TrEMBLF2E0290.0F2E029_HORVV; Predicted protein
STRINGMLOC_60274.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-53conserved peptide upstream open reading frame 7