PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60274.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 771aa    MW: 83721.2 Da    PI: 6.8652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60274.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000635746121355
                   HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLre++P+ a     k  s  + Lek+v+++  Lq
  MLOC_60274.6 574 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 612
                   67799************66.....66888899******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-8643IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00284555612No hitNo description
PROSITE profilePS5088810.588561611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-5574624IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-5574617IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MHYQFRAGIK TIAIIPVLPR GVLQLGSTGV VMENTSFVMH AKKLCSQLNQ RSSMAVSASV  60
KSTSNQSRPL HGASNIQAAD SSFSQFPVIR EQYRRADSAT ASSSKSLNAS LFEAAQQNGL  120
TAREHLVYSK PNDMFVQQPS YCVSRLGSNT QSAAISSDLI PSSLASVEQQ QMLMNTIGQL  180
EFGSGTDLAR SALLKSLLYR NPFMHDTSDM KLSHGRVGLS HGTAGHGSYG FLPGSAGVVS  240
TTLCTSSQVS EQGSHSSSGM LRQKQPPVSC NVPQSSEFTM KMVRQEGRSS EGALPVSSQS  300
DVQISNCLNG ISQENLLSRS GHMHKDQNTN RANDPHVAVS TQGVKNMDAC MLPGMPGETA  360
HSLLLQPTWD NDLFDIFGSE FHQLGHNVDA NLVSSCDAKS HSLDRDATEP SICLDSSSLF  420
SSLDNDFPCS GIFSLTNTDQ LLDAVISNVN PSSKQSSDDN ASCKTALTDI PNICHFGLEE  480
LKQCDSSGIP STVIKNESAQ IVKQPYYFDK TEDGCHSQNN GAQKSQIRLW IENGQNMKCE  540
SASASNSKGL DAPSKSNRKR SRPGESSKAR PKDRQLIQDR IKELREMVPN GAKQCSIDAL  600
LEKTVKHMLF LQSVTKHADK LKDSTESKIL GSENGPVWKD YFEGGATWAF DVGSQSMTCP  660
IIVEDLDRPR QMLVEMICED RGIFLEIADF IKGLGLTILR GVMEARKSKI WARFTVEANR  720
DVTRMEIFLS LVRLLEPNCD GSGAAENPGN SVNMPLGLVH QPVIPATGGI Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60274.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178282.10.0transcription factor LHW-like isoform X1
TrEMBLM0XI750.0M0XI75_HORVV; Uncharacterized protein
STRINGMLOC_60274.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-52conserved peptide upstream open reading frame 7