PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6041.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 427aa    MW: 46251.5 Da    PI: 5.3954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6041.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-164289148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed llv+ v+q+G g+W+++ r  g+ R++k+c++rw ++l
      MLOC_6041.1 42 KGPWTAAEDALLVNHVRQHGEGNWNAVQRITGLLRCGKSCRLRWTNHL 89
                     79******************************99***********996 PP
2Myb_DNA-binding51.32.7e-1695138146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E++l++++++qlG++ W++ a +++ gRt++++k++w++
      MLOC_6041.1  95 KGAFSPDEELLIAQLHAQLGNK-WARMATHLP-GRTDNEIKNYWNT 138
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1863789IPR017930Myb domain
SMARTSM007174.6E-144191IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-2841136IPR009057Homeodomain-like
PfamPF002494.7E-144289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-214396IPR009057Homeodomain-like
CDDcd001671.84E-114489No hitNo description
PROSITE profilePS5129423.62790144IPR017930Myb domain
SMARTSM007173.5E-1494142IPR001005SANT/Myb domain
PfamPF002494.0E-1595138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2397143IPR009057Homeodomain-like
CDDcd001671.08E-1097138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDAASLEEEK MAAAAAAADN LDEEAEQGGE GEEEAMPVVL KKGPWTAAED ALLVNHVRQH  60
GEGNWNAVQR ITGLLRCGKS CRLRWTNHLR PNLKKGAFSP DEELLIAQLH AQLGNKWARM  120
ATHLPGRTDN EIKNYWNTRA KRRQRAGLPM YPPEVQFQLA ITKRCRYDDF TPPQQSAGGN  180
VLDATDARYT SARPPPLDLA GQLAMANRPV QFLAQTPFSA PSSPWVKPSF ARNARYFQFP  240
HSSPVSPTTP VHPVTPELSL GHGQHGGERS RFTPLSPSPG AKAELPSGQL LPASPAAATP  300
TSGEDQQNLE AMLQELHDAI KIEPPKHVSD HAEQDGGSGG NKPEGELKDD DIGTLLDMII  360
PATFPMTEPA PPGVAPDNSG GSISQNGSND HDHHNVDLSV DHIPIISSEQ DWVLDGACQW  420
NNMSGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-274014325127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425371e-122BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275321e-122KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182637.10.0uncharacterized protein LOC109768314
TrEMBLM0XIM70.0M0XIM7_HORVV; Uncharacterized protein
STRINGMLOC_6041.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.17e-66myb domain protein 101