PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60436.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 368aa    MW: 39869.5 Da    PI: 7.3122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60436.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-115580227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                  +++ C +++rtG C +GdrC+++H++
  MLOC_60436.2 55 DQADCIYYLRTGACGFGDRCRYNHPR 80
                  6789********************96 PP
2zf-CCCH40.15.9e-13105129327
                   S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   ++ C ++++tGtCk+G++Ck++H++
  MLOC_60436.2 105 QPVCEYYMKTGTCKFGSNCKYHHPK 129
                   789********************96 PP
3zf-CCCH40.35.3e-13149174227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++C+++++tG+Ck+G++CkF+H++
  MLOC_60436.2 149 GEKECSYYMKTGQCKFGSTCKFHHPE 174
                   7899********************96 PP
4zf-CCCH38.91.5e-12302328127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C++++rtG Ck+G++Ck++H++
  MLOC_60436.2 302 PGQPECQYYMRTGDCKFGATCKYHHPR 328
                   5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6055381IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-55380IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-95580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-55980IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042102130IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7104131IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10105129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-6107131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812147175IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6147174IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4153173IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319301329IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5305329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4307328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEPHPAAAAG GGGGEGEAGR GADPDTGLEG SMWRMGLAGD GGGEGDGARL PERPDQADCI  60
YYLRTGACGF GDRCRYNHPR DRGGTEFGGG AKNAVALDYP ERLGQPVCEY YMKTGTCKFG  120
SNCKYHHPKQ DGSVQPVMLN SNGFPLRPGE KECSYYMKTG QCKFGSTCKF HHPEFGGVPV  180
TPGIYPPLQS STVSSPHPYA PLTNWQMGRP PVVPGSYMPG SYTPMMLSSG MIPLQGWSPY  240
PASVNPVASG GAQQTVQAGH MYGIGHHGSS STIAYGGPYM PYSSSTIQSS NNQQEHGFPE  300
RPGQPECQYY MRTGDCKFGA TCKYHHPRDW SSPKSNYMFS PFCLPLRPMS LSRSIYQTDD  360
LEGWHFTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60436.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716260.0AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.10.0zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLM0XIS60.0M0XIS6_HORVV; Uncharacterized protein
STRINGMLOC_60436.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-102C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]